下載壓縮檔
在 SARST2 下載頁面依據自己的作業系統與CPU架構，點選壓縮檔即可下載。
如何知道自己的 CPU 架構？
Windows
- 方式ㄧ
開始 > 設定 > 系統 > 系統資訊 > 裝置規格 > 系統類型
「64 位元作業系統，x64 型處理器」代表是 x86_64 (x64) 架構
「64 位元作業系統，ARM 型處理器」代表是 ARM64 架構 - 方式二
開啟 Windows 命令提示字元 (CMD)，輸入以下指令並按 Enterecho %PROCESSOR_ARCHITECTURE%
得到結果
AMD64
請下載 x86_64 版本
ARM64
請下載 ARM64 版本
Linux/macOS
- 開啟終端機 (Terminal) 輸入以下指令並按 Enter
uname -m
得到結果
x86_64
請下載 x86_64 版本
aarch64
請下載 ARM64 版本
如何開啟 Windows 命令提示字元 (CMD)？
在「開始」搜尋 "cmd"，點選開啟「命令提示字元」
解壓縮
Windows
- 右鍵點選壓縮檔，查看內容 > 一般 > 位置，取得檔案位置 (以 "D:\software" 為例)
- 開啟 Windows 命令提示字元 (CMD)，進入檔案所在磁碟
C:\User>D:
- 進入檔案所在資料夾
D:\>cd D:\software
- 將壓縮檔解壓縮
- x86_64
- zip file
tar -xf SARST2-v2.0.30-Win10+.x86_64.zip
- tar.gz file
- ARM64
- zip file
- tar.gz file
tar -zxvf SARST2-v2.0.30-Win10+.x86_64.tar.gz
tar -xf SARST2-v2.0.30-Win10+.arm64.zip
tar -zxvf SARST2-v2.0.30-Win10+.arm64.tar.gz
Linux/macOS
開啟終端機 (Terminal)
，進入壓縮檔所在資料夾，輸入以下指令 (以 Linux 為例) 並按 Enter
- x86_64
- zip file
unzip SARST2-v2.0.30-Linux.x86_64.zip
tar -xzf SARST2-v2.0.30-Linux.x86_64.tar.gz
- zip file
unzip SARST2-v2.0.30-Linux.arm64.zip
tar -xzf SARST2-v2.0.30-Linux.arm64.tar.gz
顯示各程式使用說明
Windows
進入程式所在資料夾
cd SARST2-v2.0.30-Win10+.x86_64\bin直接執行程式（或下-h），可獲得各程式之純文字簡要說明。
sarst2
.\sarst2.exeformatdb
.\formatdb.exereaddb
.\readdb.exeLinux/macOS
進入程式所在資料夾 (以 Linux 為例)
cd SARST2-v2.0.30-Win10+.x86_64/bin直接執行程式（或下-h），可獲得各程式之純文字簡要說明。
sarst2
./sarst2formatdb
./formatdbreaddb
./readdb程式執行範例
sarst2
sarst2
Pairwise alignment
on Windows
.\sarst2.exe ..\dat\1atp.pdb ..\dat\5uzkA.pdbon Linux/macOS
./sarst2 ../dat/1atp.pdb ../dat/5uzkA.pdb結果範例
D:\software>cd SARST2-v2.0.30-Win10+.x86_64\bin
D:\software\SARST2-v2.0.30-Win10+.x86_64\bin>.\sarst2.exe ..\dat\1atp.pdb ..\dat\5uzkA.pdb
+------------------------------------------------------------------------------+
| ____ _ ____ ____ _____ ____ |
| / ___| / \ | _ \/ ___|_ _|___ \ Structural similarity search |
| \___ \ / _ \ | |_) |___ \ | | __) | Aided by |
| ___) | ___ \| / ___) || | / __/ Ramachandran Sequential Transformation |
| |____/_/ \_\_|\_\|____/ |_| |_____| (v2.0.30, build 20250609) |
|______________________________________________________________________________|
| |
| Please cite our paper(s) should you find this software helpful, |
| 1. Wei-Cheng Lo, et al. (2007). BMC Bioinformatics, 8:307 |
| 2. Wei-Cheng Lo, et al. (2009). Nucleic Acids Research, 37:W545-551 |
+------------------------------------------------------------------------------+
## Query: ..\dat\1atp.pdb
Protein length = 336 residues
## Sbjct: ..\dat\5uzkA.pdb
Protein length = 337 residues
Aligned residues = 336 residues
RMSD = 0.5557 Å
Seq identity = 97.92 % (329/336)
Seq similarity = 99.70 % (335/336)
Confidence-score = 0.9792
pC-value = 0.0303
TM-score, nQuery = 0.9936 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE+P+QNTA:LDQF+RIKTLGTGSFGRVMLVKHKE+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 337One-against-all alignment
on Windows
.\sarst2.exe ..\dat\1atp.pdb ..\dat\5uzkA.pdb ..\dat\6p5pC.pdb ..\dat\101m.pdbon Linux/macOS
./sarst2 ../dat/1atp.pdb ../dat/5uzkA.pdb ../dat/6p5pC.pdb ../dat/101m.pdb結果範例
D:\software>cd SARST2-v2.0.30-Win10+.x86_64\bin
D:\software\SARST2-v2.0.30-Win10+.x86_64\bin>.\sarst2.exe ..\dat\1atp.pdb ..\dat\5uzkA.pdb ..\dat\6p5pC.pdb ..\dat\101m.pdb
+------------------------------------------------------------------------------+
| ____ _ ____ ____ _____ ____ |
| / ___| / \ | _ \/ ___|_ _|___ \ Structural similarity search |
| \___ \ / _ \ | |_) |___ \ | | __) | Aided by |
| ___) | ___ \| / ___) || | / __/ Ramachandran Sequential Transformation |
| |____/_/ \_\_|\_\|____/ |_| |_____| (v2.0.30, build 20250609) |
|______________________________________________________________________________|
| |
| Please cite our paper(s) should you find this software helpful, |
| 1. Wei-Cheng Lo, et al. (2007). BMC Bioinformatics, 8:307 |
| 2. Wei-Cheng Lo, et al. (2009). Nucleic Acids Research, 37:W545-551 |
+------------------------------------------------------------------------------+
3
## Query: ..\dat\1atp.pdb
Protein size = 336 residues
Subjects:
Dataset size = 3 structure(s)
..\dat\5uzkA.pdb, ..\dat\6p5pC.pdb, ..\dat\101m.pdb
================================================================================
Ranking Protein Size Ident(%) ASize RMSD(Å) TM-score Conf
--------------------------------------------------------------------------------
1 5uzkA 337 97.92 336 0.5557 0.9936 0.9818
2 6p5pC 375 32.74 299 2.1978 0.8291 0.7904
================================================================================
>> 1
## Sbjct: ..\dat\5uzkA.pdb
Protein length = 337 residues
Aligned residues = 336 residues
RMSD = 0.5557 Å
Seq identity = 97.92 % (329/336)
Seq similarity = 99.70 % (335/336)
Confidence-score = 0.9818
pC-value = 0.0265
TM-score, nQuery = 0.9936 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE+P+QNTA:LDQF+RIKTLGTGSFGRVMLVKHKE+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 337
>> 2
## Sbjct: ..\dat\6p5pC.pdb
Protein length = 375 residues
Aligned residues = 299 residues
RMSD = 2.1978 Å
Seq identity = 32.74 % (110/336)
Seq similarity = 54.76 % (184/336)
Confidence-score = 0.7904
pC-value = 0.3393
TM-score, nQuery = 0.8291 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKAKEDFLKKWETPSQ--------------------------------------- 21
Sbjct: 1 ---------------------RKLEALIRDPRSPINVESLLDGLNSLVLDLDFPALRKNK 39
Query: 22 ------------------NTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ 63
...+.+.+D.+K.+G.G+FG.V.LV+HK.S...YAMK+L.K.
Sbjct: 40 NIDNFLNRYEKIVKKIRGLQMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKF 99
Query: 64 KVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGR 123
::+K.........E+.I+...N.P::V+L.++F+D+..LYMVMEY:.GG++.:.+. ...
Sbjct: 100 EMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS-NYD 158
Query: 124 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---- 179
..E..A+FY.A++VL.:+.+HS+.LI+RD:KP+N+L+D+:G+++:.DFG...+:.
Sbjct: 159 VPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMD-ETGM 217
Query: 180 -RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 238
......GTP+Y++PE++.S+ Y.+..DWW+:GV:+YEM..G..PF+AD..+..Y.KI:.
Sbjct: 218 VHCDTAVGTPDYISPEVLKSQ-YGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMD 276
Query: 239 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 298
..:.FP+..S...K+L+..:L. D...R: .+NGV.+I+.H.:F....W.....R:..A
Sbjct: 277 HSLCFPAEISKHAKNLICAFLT-DREVRL--GRNGVEEIRQHPFFKNDQWHWDNIRETAA 333
Query: 299 PFIPKFKGPGDTSNFDDYEEEEIRVXIN-----------EKCGKE--FTEF- 336
P.+P::....D+SNFDD.E ...... FT.
Sbjct: 334 PVVPELSSDIDSSNFDDIE---------VETFPIPKAFVGNQLPFIGFTY-Y 375Database searching (須先以 formatdb 製作格式化資料庫)
on Windows
.\sarst2.exe ..\dat\1atp.pdb -db mySarstDbon Linux/macOS
./sarst2 ../dat/1atp.pdb -db mySarstDb結果範例
D:\software>cd SARST2-v2.0.30-Win10+.x86_64\bin
D:\software\SARST2-v2.0.30-Win10+.x86_64\bin>.\sarst2.exe ..\dat\1atp.pdb -db mySarstDb
+------------------------------------------------------------------------------+
| ____ _ ____ ____ _____ ____ |
| / ___| / \ | _ \/ ___|_ _|___ \ Structural similarity search |
| \___ \ / _ \ | |_) |___ \ | | __) | Aided by |
| ___) | ___ \| / ___) || | / __/ Ramachandran Sequential Transformation |
| |____/_/ \_\_|\_\|____/ |_| |_____| (v2.0.30, build 20250609) |
|______________________________________________________________________________|
| |
| Please cite our paper(s) should you find this software helpful, |
| 1. Wei-Cheng Lo, et al. (2007). BMC Bioinformatics, 8:307 |
| 2. Wei-Cheng Lo, et al. (2009). Nucleic Acids Research, 37:W545-551 |
+------------------------------------------------------------------------------+
## Query: ..\dat\1atp.pdb
Protein size = 336 residues
Subjects:
Dataset size = 100 structure(s)
Database = mySarstDb
================================================================================
Ranking Protein Size Ident(%) ASize RMSD(Å) TM-score Conf
--------------------------------------------------------------------------------
1 1atpE 336 100.00 336 0.0000 1.0000 0.9954
2 2ojfE 336 97.02 336 0.5339 0.9941 0.9838
3 2gfcA 337 97.62 336 0.5144 0.9946 0.9818
4 2oh0E 336 97.02 336 0.5963 0.9926 0.9813
5 1q61A 337 96.73 336 0.5151 0.9942 0.9809
6 3p0mA 337 97.92 336 0.5570 0.9934 0.9805
7 1sveA 344 97.02 334 0.5245 0.9883 0.9768
8 1xh9A 338 96.13 336 0.7475 0.9889 0.9764
9 2gniA 341 95.54 336 0.8804 0.9894 0.9750
10 3l9lA 340 97.32 336 0.9409 0.9830 0.9734
11 1q8wA 337 97.32 336 0.9435 0.9813 0.9732
12 1rekA 338 100.00 336 1.0469 0.9805 0.9731
13 1xhaA 350 95.83 334 0.7475 0.9823 0.9692
14 3l9nA 334 95.83 333 1.0637 0.9717 0.9666
15 1cmkE 350 96.43 335 2.0660 0.9303 0.9449
16 1sykA 350 98.51 332 2.7546 0.8821 0.9210
17 3ag9A 325 93.15 321 2.5384 0.8580 0.9092
18 4dfyA 311 91.07 306 3.2413 0.7769 0.8598
19 3e8dA 316 38.10 298 1.3609 0.8577 0.8120
20 7atvA 328 17.86 257 3.1805 0.6660 0.6647
21 3at2A 334 16.67 239 2.8027 0.6360 0.6530
================================================================================
>> 1
## Sbjct: ..\dat\PDB-sample\1atpE.pdb
Protein length = 336 residues
Aligned residues = 336 residues
RMSD = 0.0000 Å
Seq identity = 100.00 % (336/336)
Seq similarity = 100.00 % (336/336)
Confidence-score = 0.9954
pC-value = 0.0067
TM-score, nQuery = 1.0000 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL 60
VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL
Sbjct: 1 VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL 60
Query: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR 120
DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR
Sbjct: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR 120
Query: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 180
IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR
Sbjct: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 180
Query: 181 TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 240
TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK
Sbjct: 181 TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 240
Query: 241 VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF 300
VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF
Sbjct: 241 VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF 300
Query: 301 IPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
IPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF
Sbjct: 301 IPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
>> 2
## Sbjct: ..\dat\PDB-sample\2ojfE.pdb
Protein length = 336 residues
Aligned residues = 336 residues
RMSD = 0.5339 Å
Seq identity = 97.02 % (326/336)
Seq similarity = 98.51 % (331/336)
Confidence-score = 0.9838
pC-value = 0.0236
TM-score, nQuery = 0.9941 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL 60
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMKIL
Sbjct: 1 VKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKIL 60
Query: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR 120
DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLRR
Sbjct: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR 120
Query: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 180
IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR
Sbjct: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 180
Query: 181 TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 240
TW.LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK
Sbjct: 181 TWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 240
Query: 241 VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF 300
VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF
Sbjct: 241 VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF 300
Query: 301 IPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
IPKFKGPGDTSNFDDYEEEEIRV.INEKCGKEF+EF
Sbjct: 301 IPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF 336
>> 3
## Sbjct: ..\dat\PDB-sample\2gfcA.pdb
Protein length = 337 residues
Aligned residues = 336 residues
RMSD = 0.5144 Å
Seq identity = 97.62 % (328/336)
Seq similarity = 99.11 % (333/336)
Confidence-score = 0.9818
pC-value = 0.0265
TM-score, nQuery = 0.9946 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 337
>> 4
## Sbjct: ..\dat\PDB-sample\2oh0E.pdb
Protein length = 336 residues
Aligned residues = 336 residues
RMSD = 0.5963 Å
Seq identity = 97.02 % (326/336)
Seq similarity = 98.51 % (331/336)
Confidence-score = 0.9813
pC-value = 0.0272
TM-score, nQuery = 0.9926 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL 60
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMKIL
Sbjct: 1 VKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKIL 60
Query: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR 120
DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLRR
Sbjct: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRR 120
Query: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 180
IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR
Sbjct: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 180
Query: 181 TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 240
TW.LCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK
Sbjct: 181 TWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 240
Query: 241 VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF 300
VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF
Sbjct: 241 VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPF 300
Query: 301 IPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
IPKFKGPGDTSNFDDYEEEEIRV.INEKCGKEF+EF
Sbjct: 301 IPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF 336
>> 5
## Sbjct: ..\dat\PDB-sample\1q61A.pdb
Protein length = 337 residues
Aligned residues = 336 residues
RMSD = 0.5151 Å
Seq identity = 96.73 % (325/336)
Seq similarity = 98.81 % (332/336)
Confidence-score = 0.9809
pC-value = 0.0278
TM-score, nQuery = 0.9942 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY..GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL+IDQQGYI+VTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 337
>> 6
## Sbjct: ..\dat\PDB-sample\3p0mA.pdb
Protein length = 337 residues
Aligned residues = 336 residues
RMSD = 0.5570 Å
Seq identity = 97.92 % (329/336)
Seq similarity = 99.70 % (335/336)
Confidence-score = 0.9805
pC-value = 0.0284
TM-score, nQuery = 0.9934 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE+P+QNTA:LDQF+RIKTLGTGSFGRVMLVKHKE+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 337
>> 7
## Sbjct: ..\dat\PDB-sample\1sveA.pdb
Protein length = 344 residues
Aligned residues = 334 residues
RMSD = 0.5245 Å
Seq identity = 97.02 % (326/336)
Seq similarity = 98.51 % (331/336)
Confidence-score = 0.9768
pC-value = 0.0338
TM-score, nQuery = 0.9883 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VK----------EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKE 50
EFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E
Sbjct: 1 --KKGXEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHME 58
Query: 51 SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVA 110
+GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.
Sbjct: 59 TGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVP 118
Query: 111 GGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTD 170
GGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTD
Sbjct: 119 GGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTD 178
Query: 171 FGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI 230
FGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI
Sbjct: 179 FGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI 238
Query: 231 QIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 290
QIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA
Sbjct: 239 QIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 298
Query: 291 IYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
IYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 299 IYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 344
>> 8
## Sbjct: ..\dat\PDB-sample\1xh9A.pdb
Protein length = 338 residues
Aligned residues = 336 residues
RMSD = 0.7475 Å
Seq identity = 96.13 % (323/336)
Seq similarity = 98.81 % (332/336)
Confidence-score = 0.9764
pC-value = 0.0345
TM-score, nQuery = 0.9889 (norm size: 336 res, d0: 6.69 Å)
Query: 1 --VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMK 58
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMK
Sbjct: 1 ESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMK 60
Query: 59 ILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 118
ILDKQKVVKLK+IEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY..GGEMFSHL
Sbjct: 61 ILDKQKVVKLKEIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 120
Query: 119 RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 178
RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL+IDQQGYI+VTDFG:AKRVK
Sbjct: 121 RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVK 180
Query: 179 GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 238
GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS
Sbjct: 181 GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 240
Query: 239 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 298
GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA
Sbjct: 241 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 300
Query: 299 PFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
PFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 PFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 338
>> 9
## Sbjct: ..\dat\PDB-sample\2gniA.pdb
Protein length = 341 residues
Aligned residues = 336 residues
RMSD = 0.8804 Å
Seq identity = 95.54 % (321/336)
Seq similarity = 98.51 % (331/336)
Confidence-score = 0.9750
pC-value = 0.0366
TM-score, nQuery = 0.9894 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VK-----EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHY 55
.: EFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKT+GTGSFGRVMLVKH.E+GNHY
Sbjct: 1 XEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTIGTGSFGRVMLVKHMETGNHY 60
Query: 56 AMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMF 115
AMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY:.GG+MF
Sbjct: 61 AMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDMF 120
Query: 116 SHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 175
SHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYI+V.DFGFAK
Sbjct: 121 SHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAK 180
Query: 176 RVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 235
RVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK
Sbjct: 181 RVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 240
Query: 236 IVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRK 295
IVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRK
Sbjct: 241 IVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRK 300
Query: 296 VEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
VEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 VEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 341
>> 10
## Sbjct: ..\dat\PDB-sample\3l9lA.pdb
Protein length = 340 residues
Aligned residues = 336 residues
RMSD = 0.9409 Å
Seq identity = 97.32 % (327/336)
Seq similarity = 99.40 % (334/336)
Confidence-score = 0.9734
pC-value = 0.0389
TM-score, nQuery = 0.9830 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VK----EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYA 56
.+ EFLAKAKEDFLKKWE+P+QNTA:LDQF+RIKTLGTGSFGRVMLVKHKE+GNHYA
Sbjct: 1 EQESVKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYA 60
Query: 57 MKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFS 116
MKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFS
Sbjct: 61 MKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFS 120
Query: 117 HLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR 176
HLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR
Sbjct: 121 HLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR 180
Query: 177 VKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI 236
VKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI
Sbjct: 181 VKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI 240
Query: 237 VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV 296
VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV
Sbjct: 241 VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV 300
Query: 297 EAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
EAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 EAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 340
>> 11
## Sbjct: ..\dat\PDB-sample\1q8wA.pdb
Protein length = 337 residues
Aligned residues = 336 residues
RMSD = 0.9435 Å
Seq identity = 97.32 % (327/336)
Seq similarity = 98.81 % (332/336)
Confidence-score = 0.9732
pC-value = 0.0392
TM-score, nQuery = 0.9813 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRF.EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG
Sbjct: 121 RIGRFXEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 337
>> 12
## Sbjct: ..\dat\PDB-sample\1rekA.pdb
Protein length = 338 residues
Aligned residues = 336 residues
RMSD = 1.0469 Å
Seq identity = 100.00 % (336/336)
Seq similarity = 100.00 % (336/336)
Confidence-score = 0.9731
pC-value = 0.0393
TM-score, nQuery = 0.9805 (norm size: 336 res, d0: 6.69 Å)
Query: 1 --VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMK 58
VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMK
Sbjct: 1 ESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMK 60
Query: 59 ILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 118
ILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL
Sbjct: 61 ILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 120
Query: 119 RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 178
RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK
Sbjct: 121 RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 180
Query: 179 GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 238
GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS
Sbjct: 181 GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 240
Query: 239 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 298
GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA
Sbjct: 241 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 300
Query: 299 PFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
PFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF
Sbjct: 301 PFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 338
>> 13
## Sbjct: ..\dat\PDB-sample\1xhaA.pdb
Protein length = 350 residues
Aligned residues = 334 residues
RMSD = 0.7475 Å
Seq identity = 95.83 % (322/336)
Seq similarity = 98.21 % (330/336)
Confidence-score = 0.9692
pC-value = 0.0452
TM-score, nQuery = 0.9823 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VK----------------EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVM 44
EFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVM
Sbjct: 1 --GNAAAAKKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVM 58
Query: 45 LVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 104
LVKH.E+GNHYAMKILDKQKVVKLK+IEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM
Sbjct: 59 LVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
Query: 105 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG 164
VMEY..GGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL+IDQQG
Sbjct: 119 VMEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQG 178
Query: 165 YIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPF 224
YIQVTDFG:AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPF
Sbjct: 179 YIQVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPF 238
Query: 225 FADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 284
FADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA
Sbjct: 239 FADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 285 TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 299 TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 350
>> 14
## Sbjct: ..\dat\PDB-sample\3l9nA.pdb
Protein length = 334 residues
Aligned residues = 333 residues
RMSD = 1.0637 Å
Seq identity = 95.83 % (322/336)
Seq similarity = 98.21 % (330/336)
Confidence-score = 0.9666
pC-value = 0.0490
TM-score, nQuery = 0.9717 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE+P+QNTA:LDQF+RIKTLGTGSFGRVMLVKHKE+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY..GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL+IDQQGYI+VTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
FI .GPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 301 FI---PGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 334
>> 15
## Sbjct: ..\dat\PDB-sample\1cmkE.pdb
Protein length = 350 residues
Aligned residues = 335 residues
RMSD = 2.0660 Å
Seq identity = 96.43 % (324/336)
Seq similarity = 98.81 % (332/336)
Confidence-score = 0.9449
pC-value = 0.0817
TM-score, nQuery = 0.9303 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VK---------------EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVML 45
. EFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVML
Sbjct: 1 G-NAAAAKKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVML 59
Query: 46 VKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 105
VKHKE+GNH+AMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLE+SFKDNSNLYMV
Sbjct: 60 VKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMV 119
Query: 106 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGY 165
MEYV.GGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGY
Sbjct: 120 MEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGY 179
Query: 166 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF 225
IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF 239
Query: 226 ADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFAT 285
ADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLK+GVNDIKNHKWFAT
Sbjct: 240 ADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFAT 299
Query: 286 TDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF 336
TDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEF+EF
Sbjct: 300 TDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFSEF 350
>> 16
## Sbjct: ..\dat\PDB-sample\1sykA.pdb
Protein length = 350 residues
Aligned residues = 332 residues
RMSD = 2.7546 Å
Seq identity = 98.51 % (331/336)
Seq similarity = 98.81 % (332/336)
Confidence-score = 0.9210
pC-value = 0.1187
TM-score, nQuery = 0.8821 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VK----------------EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVM 44
EFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVM
Sbjct: 1 --GNAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVM 58
Query: 45 LVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 104
LVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM
Sbjct: 59 LVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
Query: 105 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG 164
VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG
Sbjct: 119 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG 178
Query: 165 YIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPF 224
YIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIY+MAAGYPPF
Sbjct: 179 YIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPPF 238
Query: 225 FADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 284
FADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA
Sbjct: 239 FADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
Query: 285 TTDWIAIYQRKVEAPFIPKFKGPGD--TSNFDDYEEEEIRVXINEKCGKEFTEF 336
TTDWIAIYQRKVEAPFIPKFKGP TSNFDDYEEEEIRVXINEKCGKEFTEF
Sbjct: 299 TTDWIAIYQRKVEAPFIPKFKGP--GDTSNFDDYEEEEIRVXINEKCGKEFTEF 350
>> 17
## Sbjct: ..\dat\PDB-sample\3ag9A.pdb
Protein length = 325 residues
Aligned residues = 321 residues
RMSD = 2.5384 Å
Seq identity = 93.15 % (313/336)
Seq similarity = 94.64 % (318/336)
Confidence-score = 0.9092
pC-value = 0.1373
TM-score, nQuery = 0.8580 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWE.P+QNTA:LDQF+RIKTLGTGSFGRVMLVKH.E+GNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTGSFGRVMLVKHMETGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV.GGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 180
Query: 180 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 239
RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG
Sbjct: 181 RTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 240
Query: 240 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 299
KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP
Sbjct: 241 KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP 300
Query: 300 FIPKFKGPGDTSNFDDYE---EEEIRVXINEKCGKEFTEF 336
FIP EEEIRVXINEKCGKEF+EF
Sbjct: 301 FIP---------------KFEEEEIRVXINEKCGKEFSEF 325
>> 18
## Sbjct: ..\dat\PDB-sample\4dfyA.pdb
Protein length = 311 residues
Aligned residues = 306 residues
RMSD = 3.2413 Å
Seq identity = 91.07 % (306/336)
Seq similarity = 91.07 % (306/336)
Confidence-score = 0.8598
pC-value = 0.2179
TM-score, nQuery = 0.7769 (norm size: 336 res, d0: 6.69 Å)
Query: 1 -VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 59
VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI
Sbjct: 1 SVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI 60
Query: 60 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 119
LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR
Sbjct: 61 LDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 120
Query: 120 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 179
RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF
Sbjct: 121 RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF------ 174
Query: 180 RTWXLCG-TPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 238
TPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS
Sbjct: 175 -------ATPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS 227
Query: 239 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 298
GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA
Sbjct: 228 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 287
Query: 299 PFIPKFKGPGDTSNFDDYEE---EEIRVXINEKCGKEFTEF 336
PFI EEIRVXINEKCGKEFTEF
Sbjct: 288 PFI-----------------PKFEEIRVXINEKCGKEFTEF 311
>> 19
## Sbjct: ..\dat\PDB-sample\3e8dA.pdb
Protein length = 316 residues
Aligned residues = 298 residues
RMSD = 1.3609 Å
Seq identity = 38.10 % (128/336)
Seq similarity = 57.44 % (193/336)
Confidence-score = 0.8120
pC-value = 0.3005
TM-score, nQuery = 0.8577 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL 60
...++.FD.+K.LG.G+FG+V+LV+.K.+G.+YAMKIL
Sbjct: 1 ----------------------KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKIL 38
Query: 61 DKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR 120
.K+.++...++.HT:.E.R+LQ....PFL..L:++F+.:..L..VMEY..GGE+F.HL.R
Sbjct: 39 RKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSR 98
Query: 121 IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRV--- 177
...F+E..ARFY.A+IV..:EYLHS.D:+YRD+K.ENL++D+.G+I++TDFG:.K.
Sbjct: 99 ERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE-GIS 157
Query: 178 -KGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI 236
.....X:CGTPEYLAPE++....Y.+AVDWW.LGV:+YEM..G..PF+.....:++E.I
Sbjct: 158 DGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI 217
Query: 237 VSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV 296
:..:+RFP..:S.+.K.LL..LL+.D..+R:G...:...++..H+:F.+.+W..+.Q+K:
Sbjct: 218 LMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKL 277
Query: 297 EAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCG-------KEFTEF------- 336
..PF.P+.....DT..FDD ..F.+F
Sbjct: 278 LPPFKPQVTSEVDTRYFDD---------------EFTAQSITHFPQFDYSASIR 316
>> 20
## Sbjct: ..\dat\PDB-sample\7atvA.pdb
Protein length = 328 residues
Aligned residues = 257 residues
RMSD = 3.1805 Å
Seq identity = 17.86 % (60/336)
Seq similarity = 37.50 % (126/336)
Confidence-score = 0.6647
pC-value = 0.5892
TM-score, nQuery = 0.6660 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKA--------------KED--FLKK-WETPSQNTAQLDQFDRIKTLGTGSFGRV 43
. +. +E....:....D.+..++.LG.G.+..V
Sbjct: 1 --------GSRARVYAEVNSLRS--REYW--DYEAHVPSWGNQDDYQLVRKLGRGKYSEV 48
Query: 44 MLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ-AVNFPFLVKLEFSFKDNS-- 100
....:..:.....:KIL.. .+.:....E.+IL+ ......++KL..+.KD..
Sbjct: 49 FEAINITNNERVVVKILKP------VKKKKIKREVKILENLRGGTNIIKLIDTVKDPVSK 102
Query: 101 NLYMVMEYVAGGEMFSHL--RRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENL 158
...+V.EY+...+ :....:++...RFY..++:..:+Y.HS..+++RD:KP.N:
Sbjct: 103 TPALVFEYINNTD-----FKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNV 157
Query: 159 LID-QQGYIQVTDFGFAKRVKG-RTWXLC-GTPEYLAPEIILS-KGYNKAVDWWALGVLI 214
+ID QQ..+::.D:G:A:.... :.+.:. .+..+..PE++:. +.Y+.+:D.W+LG.++
Sbjct: 158 MIDHQQKKLRLIDWGLAEFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCML 217
Query: 215 YEMAAGYPPFF-ADQPIQIYEKIVS------------------------------GKVRF 243
..M.....PFF .........+I. .+.R
Sbjct: 218 ASMIFRREPFFHGQDNYDQLVRIA-KVLGTEELYGYLKKYHIDLDPHFNDILGQHSRKR- 275
Query: 244 ---------PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWI-AIYQ 293
....S.+..DLL..LL:.D..+R ....+...H.+F + .+
Sbjct: 276 WENFIHSENRHLVSPEALDLLDKLLRYDHQQR-----LTAKEAMEHPYF----Y-PVV-- 323
Query: 294 --RKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKCGKEFTEF-- 336
:
Sbjct: 324 KEQ------------------------------------------SQ 328
>> 21
## Sbjct: ..\dat\PDB-sample\3at2A.pdb
Protein length = 334 residues
Aligned residues = 239 residues
RMSD = 2.8027 Å
Seq identity = 16.67 % (56/336)
Seq similarity = 36.01 % (121/336)
Confidence-score = 0.6530
pC-value = 0.6148
TM-score, nQuery = 0.6360 (norm size: 336 res, d0: 6.69 Å)
Query: 1 VKEFLAKAKED---------------------FLKK--WE-TPSQNTAQLDQFDRIKTLG 36
+ + +........D.+..++.LG
Sbjct: 1 -----------SGPVPSRARVYTDVNTHRPREY---WDY-ESHVVEWGNQDDYQLVRKLG 45
Query: 37 TGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ-AVNFPFLVKLEFS 95
.G.+..V....:..:.....:KIL.. .+.:....E.+IL+ ....P.++.L...
Sbjct: 46 RGKYSEVFEAINITNNEKVVVKILKP------VKKKKIKREIKILENLRGGPNIITLADI 99
Query: 96 FKD--NSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDL 153
.KD :....+V.E+V...+. .:L.:.. ++...RFY..+I:..:+Y.HS+.+++RD:
Sbjct: 100 VKDPVSRTPALVFEHVNNTDF-KQLYQTL--TDYDIRFYMYEILKALDYCHSMGIMHRDV 156
Query: 154 KPENLLIDQ--QGYIQVTDFGFAKRVKG-RTWXLC-GTPEYLAPEIILS-KGYNKAVDWW 208
KP.N:+ID :..+::.D:G:A:.... :.+.:. .+..+..PE++:. +.Y+.+:D.W
Sbjct: 157 KPHNVMID-HEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMW 215
Query: 209 ALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS----------------------- 245
+LG.++..M.....PFF
Sbjct: 216 SLGCMLASMIFRKEPFF--------------------HGHDNYDQLVRIAKVLGTEDLYD 255
Query: 246 -----------------------------------HFSSDLKDLLRNLLQVDLTKRFGNL 270
..S.+..D:L..LL:.D...R
Sbjct: 256 YIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSR---- 311
Query: 271 KNGVNDIKNHKWFATTDWIAIY-QRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVXINEKC 329
....+...H.+F +..+ .:
Sbjct: 312 -LTAREAMEHPYF----YTVV-KDQ----------------------------------- 330
Query: 330 GKEFTEF---- 336
Sbjct: 331 -------ARMG 334formatdb
formatdb
on Windows
.\formatdb.exe "..\dat\PDB-sample\*.pdb" -db mySarstDbon Linux/macOS
./formatdb "../dat/PDB-sample/*.pdb" -db mySarstDb結果範例
D:\software>cd SARST2-v2.0.30-Win10+.x86_64\bin
D:\software\SARST2-v2.0.30-Win10+.x86_64\bin>.\formatdb.exe "..\dat\PDB-sample\*.pdb" -db mySarstDb
+------------------------------------------------------------------------------+
| SARST (v2.0.30, build 20250609) |
| Structural similarity search Aided by Ramachandran Sequential Transformation |
| |
| Authors: Wei-Cheng Lo, Arieh Warshel, Chia-Hua Lo, et al. |
+------------------------------------------------------------------------------+
# Processed # Queued === Structure files ===
100 100 In queue : ..\dat\PDB-sample\*.pdb
Subjects: ..\dat\PDB-sample\*.pdb
Dataset size = 100 structure(s)使用以下指令可查看資料夾當前內容
on Windows
diron Linux/macOS
ls如果程式正常執行，將會看到 7 個主檔名為 mySarstDb 的檔案，與一個名為 mySarstDb 的檔案紀錄執行時間
readdb
readdb (須先以 formatdb 製作格式化資料庫)
on Windows
.\readdb.exe mySarstDb seqs.fastaon Linux/macOS
./readdb mySarstDb seqs.fasta結果範例
D:\software>cd SARST2-v2.0.30-Win10+.x86_64\bin
D:\LabWork\working\250715_test\SARST2-v2.0.30-Win10+.x86_64\bin>.\readdb.exe mySarstDb seqs.fasta
+------------------------------------------------------------------------------+
| SARST (v2.0.30, build 20250609) |
| Structural similarity search Aided by Ramachandran Sequential Transformation |
| |
| Authors: Wei-Cheng Lo, Arieh Warshel, Chia-Hua Lo, et al. |
+------------------------------------------------------------------------------+
Output type: Amino acid sequence
## Retrieving the entry list... (mySarstDb)
=> 100 entries
## Writing sequences...
100
## Finished
=> 100 sequences written to 'seqs.fasta'.使用以下指令可查看 seqs.fasta 內容
on Windows
type seqs.fastaon Linux/macOS
cat seqs.fasta結束後如何離開？
使用
exit